Sequencher has been developed to work with a wide range of sequencing applications. For example, Sequencher can be used to Create assemblies for shotgun or EST sequencing projects,Edit contigs while viewing all relevant trace data .Assemble multiple sequences to a user-defined Reference Sequence.Detect and annotate polymorphisms Align DNAs to their genomic sequence using the Large Gap algorithm.Discover heterozygous peaks,Create difference reports for SNP discovery, Display restriction maps, ORF maps, protein translations.Automatically trim poor quality and vector sequences.

Support site:
https://www.genecodes.com/